# WoodratHybridZone_CurrentBiology

## Description

Dataset to run spatial mark-recapture model to estimate woodrat survival rates and movement of the hybrid zone. The data are in an RData file with the objects in the file described below.

## Files

## Steps to reproduce

Code to run associated model can be found at: https://github.com/kevintshoemaker/woodrat-hybridzone NOTE: please contact Dr. M. Matocq at UNR for access to the full data set used for these analyses. ###Data in file # D2 - [k,k] array; Squared distance between quadrant centers (quandrant center defined as the average x and y coordinates of all houses in a quadrant) # eff.per - [k, t] array; Number of trap-nights trapped in each quadrant for each period # firstQuad - [i] array; Initial quadrant where each individual was first trapped # firsts - [i] array; The first period each individual was captured (when the enter the population) # ind.quad.per - [i,t,k] array; Capture history of each individual, period, and quadrant # isFu - [i] array; Logical indicating whether an individual is of the N. fuscipes type # isHyb - [i] array; Logical indicating whether an individual is of the hybrid type # isJuv - [i, t] array; Logical indicating whether an individual is a juvenile in a given period # isMa - [i] array; Logical indicating whether an individual is of the N. macrotis type # isMale - [i] array; Logical indicating whether an individual is a male # mast.std - [i] array; standardized covariate of acorn mast abundance from previous year # nindG - numeric; total number of individuals ever captured # nperiodsG - numeric; total number of periods # nquad - numeric; total number of quadrants # perioddurG - [t-1] array; duration (in fraction of a year) between current period and the previous (from median date to median date) # precipspring.std - numeric; standardized covariate of spring precipitation # precipwinter.std - numeric; standardized covariate of winter precipitation # prop.per.Fu - [t,k] array; relative proportion of N. fuscipes (compared to other types) in each period and quadrant (some values were interpolated when a quadrant was not surveyed, this was done to improve model convergence for movement probabilities and does not affect survival estimates) # prop.per.hyb - [t,k] array; relative proportion of hybrids (compared to other types) in each period and quadrant (some values were interpolated when a quadrant was not surveyed, this was done to improve model convergence for movement probabilities and does not affect survival estimates) # prop.per.Ma - [t,k] array; relative proportion of N. macrotis (compared to other types) in each period and quadrant (some values were interpolated when a quadrant was not surveyed, this was done to improve model convergence for movement probabilities and does not affect survival estimates) # trapped - [t,k] array; which qudrants were sampled in each period # trapped.num - [t] array; number of quadrants sampled in each period