Context embeddings trained on short sequence FASTA files with binding site
Published: 26 April 2023| Version 2 | DOI: 10.17632/cr9jf45xrr.2
Data to generate "FIGURE 4: Context embeddings trained on short sequence FASTA files with binding site – N = 28,052" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries" by Daniel H. Um, et al.
Steps to reproduce
Use Context_Embeddings_3D_Plot_Generation_Script.ipynb on binding_site_28052.fasta to generate 3D_plot_FASTA_with_binding_site.png.
Bioinformatics, Machine Learning