CNIR_DMD-optofMRI

Published: 16 February 2023| Version 1 | DOI: 10.17632/f7m6495v55.1
Contributor:
Hyun Seok Moon

Description

Original codes and sample data from Kim et al. 2023, Neuron, "Whole-brain mapping of effective connectivity by fMRI with cortex-wide patterned optogenetics" (In press). The procedure described here is for generating subject-specific optogenetic stimulus pattern based on Allen mouse brain atlas (https://atlas.brain-map.org/), by coregistration between the Atlas, brain structural MR image and optical fluorescence image from a mouse. The generated patterns are transferred to a digital micromirror device (DMD) and then projected onto a thinned-skull-prepared mouse brain.

Files

Steps to reproduce

Described in Readme.docx

Institutions

Institute for Basic Science Center for Neuroscience Imaging Research, Sungkyunkwan University

Categories

Functional Magnetic Resonance Imaging

Licence