L.vannamei DEGs under acid stress

Published: 7 July 2018| Version 1 | DOI: 10.17632/fgwmwwy8gk.1
Hongmei Li, Qilin Meng, Ting Chen, Chunhua Ren, Chaoqun Hu, Da Huo, Wen Huang, xiao jiang


Litopenaeus vannamei Transcriptome under acid and alkline stresses. To understand the molecular mechanism of crustacean responses to low pH, we used RNA sequencing (RNA-seq) and investigated expression changes in whole gill transcriptomes of L. vannamei. We compared gill transcriptome of adult L. vannamei challenged by low pH (pH= 6.8) and a nonchallenged control group (pH= 8.0) at 1 h and 48 h, by using the Illumina HiSeq 4000 platform. This is the first study addressing the molecular response of the gills of L. vannamei to low pH stress at the whole-transcriptome level. The raw reads data can be obtained from the Short Read Archive of the National Center for Biotechnology Information under accession number SRP116151 or bioproject number PRJNA400112. The raw FASTQ file is too large for Mendeley storage limit, please refer to NCBI SRA.



Chinese Academy of Sciences, South China Sea Institute of Oceanology Chinese Academy of Sciences


Transcriptome, Environment (Patient Social Context), Shrimps