NASA RR-3 Brain Dataset

Published: 11 April 2024| Version 1 | DOI: 10.17632/fjxrcbh672.1
Yuvarani Masarapu


This dataset is cited in the study titled "Spatially resolved multiomics on the neuronal effects induced by spaceflight". This dataset contains the following: Counts data for each brain tissue section including corresponding spot coordinates and images processed by Spaceranger; final object containing the deconvolution results processed using Stereoscope; final analysed objects, corresponding metadata file and final rmarkdown html document showing the final plots from the multiomics analysis; and final analysed seurat object with ST clusters and corresponding annotations. The metabolic analysis files and output files required to perform the analysis are under the folder.


Steps to reproduce

The code for the complete analysis pipeline to reproduce is provided under the github repository:


Karolinska Institutet, KTH Royal Institute of Technology Gene technology


Neuroscience, Biotechnology, Mouse, RNA, Brain, Transcriptomics, Spatial Analysis, ATAC-Seq