NASA RR-3 Brain Dataset

Published: 11 April 2024| Version 1 | DOI: 10.17632/fjxrcbh672.1
Contributor:
Yuvarani Masarapu

Description

This dataset is cited in the study titled "Spatially resolved multiomics on the neuronal effects induced by spaceflight". This dataset contains the following: Counts data for each brain tissue section including corresponding spot coordinates and images processed by Spaceranger; final object containing the deconvolution results processed using Stereoscope; final analysed objects, corresponding metadata file and final rmarkdown html document showing the final plots from the multiomics analysis; and final analysed seurat object with ST clusters and corresponding annotations. The metabolic analysis files and output files required to perform the analysis are under the data_metabolic_analysis.zip folder.

Files

Steps to reproduce

The code for the complete analysis pipeline to reproduce is provided under the github repository: https://github.com/giacomellolab/NASA_RR3_Brain.

Institutions

Karolinska Institutet, KTH Royal Institute of Technology Gene technology

Categories

Neuroscience, Biotechnology, Mouse, RNA, Brain, Transcriptomics, Spatial Analysis, ATAC-Seq

Licence