Dataset 9 - Representative Sets Of Singular Non-haemolytic, Non-Toxic AMPs From Cnidaria Extracted Via Harmonic And Hub-Bridge Network Centralities, Including The Union And Intersection Datasets

Published: 6 December 2024| Version 1 | DOI: 10.17632/gdrn9sypx4.1
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Description

Results from the Harmonic and Hub-Bridge Network Centralities applied to the 3,130 Cnidaria Singular AMPs (CnSA) obtained from Cnidaria Omics Data

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Steps to reproduce

1. Clusters/communities in the Half Space Proximal Network (HSPN) of the 3,130 Cnidaria Singular AMPs (CnSA) from "Mendeley Data, V1, doi: 10.17632/jh6fcc69r9.1" were identified from the Louvain method 2. Two centrality measures: harmonic (HC) and hub-bridge (HB) centrality, were calculated 3. The AMPs were ranked down according to their centrality values and reduced by applying local alignment comparison at 0.35 of sequence identity 4. Two representative datasets were extracted: the union and intersection of the peptides identified by HC and HB centralities

Institutions

Universidade do Porto Centro Interdisciplinar de Investigacao Marinha e Ambiental, Universidad San Francisco de Quito Colegio de Ciencias de la Salud, Universidad Panamericana Aguascalientes Facultad de Ingenieria, Universidade do Porto Faculdade de Ciencias

Categories

Peptides, Biodiscovery, Omics, Antimicrobial

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