Scripts and data for: Emergent predictability in microbial ecosystems

Published: 11 December 2025| Version 2 | DOI: 10.17632/gxcvv6r5f7.2
Contributors:
Jacob Moran, Lucas Graham, Mikhail Tikhonov

Description

Raw data, Matlab analysis scripts and simulation code reproducing all figures in Moran, Graham & Tikhonov (2025), "Emergent predictability in microbial ecosystems." Optional pre-computed simulation data included to speed-up figure plotting -- remove or rename any data file to rerun the corresponding analysis or simulations from scratch. Updates in v2: added the code for invasion experiment simulations in CRM and GLV (inadvertently omitted in v1), and added the niche-filling analysis (new in v2).

Files

Steps to reproduce

Follow steps in scripts: RunMe.m, and SI_RunMe.m

Institutions

University of Michigan, Washington University in Saint Louis Department of Physics

Categories

Ecology, Computer Simulation, Coarse Graining Method, Microbial Community

Licence