Germline SNPs and indels in patients with atherosclerosis
The dataset contains germline SNPs and indels of white blood cells and carotid atherosclerotic plaque of the same patients. The data was gathered by whole-exome sequencing technology. The variants were calling by GATK4 Best practice workflow “Germline short variant discovery (SNPs + Indels).”
Steps to reproduce
The exon regions were sequenced by HiSeq 1500 (Illumina) with 2х150 paired-end format. The SureSelect Clinical Research Exome V2 exome enrichment kit (Design ID #S06588914) was used.