Germline SNPs and indels in patients with atherosclerosis

Published: 1 December 2021| Version 1 | DOI: 10.17632/hj68dfm5sm.1
Contributors:
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Description

The dataset contains germline SNPs and indels of white blood cells and carotid atherosclerotic plaque of the same patients. The data was gathered by whole-exome sequencing technology. The variants were calling by GATK4 Best practice workflow “Germline short variant discovery (SNPs + Indels).”

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Steps to reproduce

The exon regions were sequenced by HiSeq 1500 (Illumina) with 2х150 paired-end format. The SureSelect Clinical Research Exome V2 exome enrichment kit (Design ID #S06588914) was used.

Institutions

Tomskij nacional'nyj issledovatel'skij medicinskij centr Rossijskoj akademii nauk

Categories

Clinical Genetics, Atherosclerosis, Single Nucleotide Polymorphism, Exome Sequencing

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