Comparative transcriptome analysis of muscle of zebrafish (Danio rerio) acclimated to different environmental temperatures
Description
Temperature is an important environmental factor that could alter physiological and biochemical process of fish. We hypothesize that long-term temperature acclimation may alter muscle growth and collagen deposition in zebrafish, thus affecting the flesh texture of fish. Here, comparative transcriptome analysis was conducted to explore the potential molecular mechanism underlying the effects of temperature on flesh texture (collagen depostion, muscle fiber growth, etc) of zebrafish. We analyzed the differentially expressed genes (DEGs) between muscle of zebrafish acclimated to different temperatures (18°C，28°C，34°C) . Several important DEGs and KEGG pathways were identified to be potentially involved in the temperature-regulated alternation of flesh texture of fish. File S1: Expression and functional annotation of unigenes in differerent temperature groups; File S2: DEGs of muscle in 18 °C vs 28 °C group; File S3: DEGs of muscle in 28 °C vs 34 °C group； File S4: DEGs of muscle in 18 °C vs 34 °C group； File S5: KEGG pathway enrichment analysis of the DEGs in 18 °C vs 28 °C group; File S6: KEGG pathway distribution of the DEGs in 18 °C vs 28 °C group. File S7: KEGG pathway enrichment analysis of the DEGs in 28 °C vs 34 °C group; File S8: KEGG pathway distribution of the DEGs in 28 °C vs 34 °C group. File S9: KEGG pathway enrichment analysis of the DEGs in 18 °C vs 34 °C group; File S10: KEGG pathway distribution of the DEGs in 18 °C vs 34 °C group.