FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures

Published: 16-09-2016| Version 1 | DOI: 10.17632/hp9c2b4ysj.1
Derek Groen,
Agastya P. Bhati,
James Suter,
James Hetherington,
Stefan J. Zasada,
Peter V. Coveney


We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a systematic way to automate the use of resources, including HPC and distributed machines, and to make tasks easier to repeat by recording contextual information. To demonstrate this, we present three use cases where FabSim has enhanced our research productivity. These include simulating cerebrovascular bloodflow, modelling clay-polymer nanocomposites across multiple scales, and calculating ligand–protein binding affinities.