Hybrid OpenMP/MPI programs for solving the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap

Published: 4 November 2016| Version 2 | DOI: 10.17632/hrk84bznv2.2
Bogdan Sataric,
Vladimir Slavnic,
Aleksandar Belic,
Antun Balaz,
Paulsamy Muruganandam,
Sadhan Adhikari


We present hybrid OpenMP/MPI (Open Multi-Processing/Message Passing Interface) parallelized versions of earlier published C programs (D. Vudragovi\'{c} et al. (2012) [1]) for calculating both stationary and non-stationary solutions of the time-dependent Gross-Pitaevskii (GP) equation in three spatial dimensions. The GP equation describes the properties of dilute Bose-Einstein condensates at ultra-cold temperatures. Hybrid versions of programs use the same algorithms as the C ones, involving real- and imaginary-time propagation based on a split-step Crank-Nicolson method, but consider only a fully-anisotropic three-dimensional GP equation, where algorithmic complexity for large grid sizes necessitates parallelization in order to reduce execution time and/or memory requirements per node. Since distributed memory approach is required to address the latter, we combine MPI programing paradigm with existing OpenMP codes, thus creating fully flexible parallelism within a combined distributed/shared memory model, suitable for different modern computer architectures. The two presented C/OpenMP/MPI programs for real- and imaginary-time propagation are optimized and accompanied by a customizable makefile. We present typical scalability results for the provided OpenMP/MPI codes and demonstrate almost linear speedup until inter-process communication time starts to dominate over calculation time per iteration. Such a scalability study is necessary for large grid sizes in order to determine optimal number of MPI nodes and OpenMP threads per node. Previous versions of this program (AEDU_v1_0 and AEDU_v2_0) may be found at dx.doi.org/10.1016/j.cpc.2009.04.015 and dx.doi.org/10.1016/j.cpc.2012.03.022 respectively. The original version of this dataset (http://dx.doi.org/10.17632/hrk84bznv2.1) contains a typo in one source file, which has been corrected in the present version.



Natural Sciences