Data for: Influence of spatial structure on protein damage susceptibility – A bioinformatics approach

Published: 22 February 2021| Version 1 | DOI: 10.17632/jkmbpfgp4k.1
Contributors:
Maximilian Fichtner,
Stefan Schuster,
Heiko Stark

Description

The supplementary data contains the folders: data: - data plus description after step 5 in Suppl. 1 - the multimodels.txt from cloud2, created by the multimodels.macro - a TEST.txt file with specific sequences that can be used to see where they score; the scorer_3D.pl looks specificaly for them and gives them out on the console output: - all the final output data for all the different parts analysed, that can be used for own analysis programs: - the perl programs that were used to produce this work R data and script: - the script to calculate the statistics in the supplement and to draw the violin-boxplot - the R workspace with the read in data scripts for Cloud2: - the scripts that were used in Cloud2 to get the specific output Additionally there is the file 'amino_acid_distribution.ods' which contains the diagrams, that were used in the publication, and their calculations. Finaly there is the file 'TopBot100.ods' which contains the best and worst 100 entries for every analysis (see Suppl. 7). For further explanation of the data please refer to the supplement.

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Institutions

Friedrich-Schiller-Universitat Jena

Categories

Amino Acids, 3D Analysis, Reactive Oxygen Species, Protein-Related Bioinformatics, Computational Bioinformatics

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