Multi-omics data integration provides insights into the post-harvest biology of a long shelf-life tomato landrace

Name: Multi-omics data integration provides insights into the post-harvest biology of a long shelf-life tomato landrace
Creator: Riccardo Aiese Cigliano
Published: 2021-05-28T20:26:33.931Z
Keywords: MicroRNA, Transcriptomics, DNA Methylation, Plant Senescence, Histone Modification

Aiese Cigliano, Riccardo; Aversano, Riccardo; Di Matteo, Antonio; Palombieri, Samuela; Termolino, Pasquale; Angelini, Claudia; Bostan, Hamed; Cammareri, Maria; Consiglio, Federica; Della Ragione, Floriana; Paparo, Rosa; Totev Valkov, Vladimir; Vitiello, Antonella; Carputo, Domenico; Chiusano, Maria Luisa; D'Esposito, Maurizio; Grandillo, Silvana; Matarazzo, Maria Rosaria; Frusciante, Luigi; D'Agostino, Nunzio; Conicella, Clara

doi:10.17632/jnhhh4v9zm.3

Multi-omics data integration provides insights into the post-harvest biology of a long shelf-life tomato landrace

Published: 28 May 2021| Version 3 | DOI: 10.17632/jnhhh4v9zm.3

Contributors:

Riccardo Aiese Cigliano,

,

Description

In this study we investigated the transcriptome and epigenome dynamics of the tomato fruit during post-harvest in ‘Lucariello’. ‘Lucariello’ belongs to a group of landraces collectively known as ‘Piennolo del Vesuvio’. This dataset includes: - RPKM expression values from three post-harvest stages of Lucariello fruits, time points RD0, RD60 and RD150. Each group has three biological replicates. The listed loci are from the Lucariello reference genome - Raw expression counts of miRNA from the same samples - DNA gene methylation levels from the same samples, divided for CG, CHG and CHH context - ChIP-seq peaks for H3K4me3, H3K9K14ac, H3K27me3 from the same samples, two biological replicates

Multi-omics data integration provides insights into the post-harvest biology of a long shelf-life tomato landrace

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