Data for: Four hundred shades of brown: Higher level phylogeny of the problematic Euptychiina (Lepidoptera, Nymphalidae, Satyrinae) based on hybrid enrichment data

Published: 13 November 2018| Version 1 | DOI: 10.17632/m7gc59vnp3.1
Contributors:
Marianne Espeland,
Jesse W. Breinholt,
Eduardo P. Barbosa,
Mirna Casagrande,
Blanca Huertas,
Gerardo Lamas,
Mario Alejandro Marín,
Olaf H.H. Mielke,
Jacqueline Miller,
Shinichi Nakahara,
Denise Tan,
Andrew D. Warren,
Thamara Zacca,
Akito Y. Kawahara,
André V. L. Freitas,
Keith Willmott

Description

This dataset contains data for the paper Espeland et al. xxx. Four hundred shades of brown: Higher level phylogeny of the problematic Euptychiina (Lepidoptera, Nymphalidae, Satyrinae) based on hybrid enrichment data. Molecular Phylogenetics and Evolution, https://doi.org/10.1016/j.ympev.2018.10.039 The following data is available: 1) Alignments_of_all_loci.zip: Alignments in fasta format of all loci used in the analyses 2) Concatenated_alignments_models_and_partition_files.zip : The concatenated alignment in phylip format, as well as both a locus partition file (part.txt), which can be used to split the alignment into individual loci, and a file (models_merge.nex) with the partitions and substitution models used in the analyses. 3) Maximum_likelihood_newick.tree: The maximum likelihood tree topology inferred using IQ-tree. In newick format. 4) Exabayes.tree: Maximum credibility tree inferred using bayesian inference in Exabayes. In nexus format. 5) ASTRAL_output_filtered.tre: Species tree topology inferred using ASTRAL based on the filtered dataset, e.g. only loci longer than 250bps and with a GC value lower than 60 were included. In newick format. 6) ASTRAL_ouput_all.tree: Species tree topology inferred using ASTRAL based on the total dataset. In newick format. Raw sequence data can be found at the NCBI Short Read Archive: Bioproject PRJNA483787

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