Dataset 2 - Protein Libraries Of Seven Databases From Cnidaria Omics Data After Duplicates Removal and AMPir Prediction
Published: 6 December 2024| Version 1 | DOI: 10.17632/myp4j56gpz.1
Contributors:
, , , , Description
Non duplicated AMP precursor protein libraries from 7 databases of Cnidaria: Db1 – 6 proteomes derived from sequenced genomes of Anthozoa Db2 – 2 proteomes derived from sequenced genomes of Medusozoa Db3 – 46 whole body/non-specific transcriptomes of Anthozoa Db4 – 24 whole body/non specific transcriptomes of Medusozoa Db5 – 25 transcriptomes specific to the tentacles of Anthozoa Db6 – 7 transcriptomes specific to the tentacles of Medusozoa Db7 – 2 transcriptomes specific to the nematocysts of Anthozoa
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Steps to reproduce
1. Screening of all non duplicated protein libraries from dataset “Mendeley Data, V1, doi: 10.17632/grwy638mtr.1" for potential AMP precursor proteins using the AMPir (antimicrobial peptide prediction in r) precursor model
Institutions
Universidade do Porto Centro Interdisciplinar de Investigacao Marinha e Ambiental, Universidad San Francisco de Quito Colegio de Ciencias de la Salud, Universidad Panamericana Aguascalientes Facultad de Ingenieria, Universidade do Porto Faculdade de Ciencias
Categories
Peptides, Biodiscovery, Omics, Antimicrobial