Single-Cell VIPER Identifies Recurrence-Associated Renal Tumor Macrophages

Published: 12 May 2021| Version 1 | DOI: 10.17632/nc9bc8dn4m.1
Contributors:
Aleksandar Obradovic,
Nivedita Chowdhury,
Scott Haake,
Casey Ager,
Vinson Wang,
Lukas Vlahos,
Xinzheng Guo,
David Aggen,
Kim Rathmell,
Eric Jonasch,
Joyce Johnson,
James McKiernan,
Brian Rini,
Andrea Califano,
Charles Drake,
Mark Roth,
Katy Backermann

Description

single-cell RNASeq, IHC, flow cytometry, bulk RNASeq data, and code supporting the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcinoma Associated with Clinical Outcome Identified Using Single-Cell Protein Activity Inference"

Files

Steps to reproduce

Follow included code to generate each set of corresponding manuscript Figures using the included raw data.