Spatial transcriptomics of human placentas reveal distinct RNA patterns associated with morphology and preeclampsia
The deposited data is presented in the manuscript by Bhalla N et al., with the title "Spatial transcriptomics of human placentas reveal distinct RNA patterns associated with morphology and preeclampsia". This dataset contains the count files in TSV format (count file with raw counts (UMI filtered) for each gene and capture spot) for all the samples in the folder "ST_count_matrices". The spot detector output files (file with spatial pixel coordinate information produced using the Spot Detector webtool) can be found in the folder "Spot_detector_output". The high resolution H&E images of the sections can be found in "HE_images(High_res)" and the resized H&E images used in data analysis can be found in "HE_images (size30)_forST". Additionally, a STUtility object, created using the R package STUtility (a wrapper of Seurat), of all the samples with the abovementioned information is also loaded to the dataset.
Steps to reproduce
All R scripts used for the data analyses can be found at https://github.com/okazakib/st-placenta.