Phylogenetic trees and functional domain composition of LGT candidates in Blastocystis sp. ST1.

Published: 28-01-2017| Version 1 | DOI: 10.17632/pktp3hggf7.1
Laura Eme


The left hand side represents the ML tree, arbitrarily shown midpoint rooted. Only UltraFast bootstrap support values above 70 are displayed. Blastocystis homologues are represented in red while others are in black. Colored squares at the tips represent the phylum level classification: teal, purple and salmon represent bacterial, archaeal and eukaryotic homologues, respectively. To the right of each sequence name is displayed its Genbank annotation and the function domain composition inferred with hmmscan (see Experimental procedures). While domains size and position are displayed for each sequence, sequences are not shown aligned to each other. Question marks indicate that no functional domain was detected above the 10e-3 e-value cutoff. The identifiers in the top left corner of pages correspond to the gene locus listed in Table S1.