oc_cluster

Published: 17 January 2025| Version 1 | DOI: 10.17632/rb6zzz47fz.1
Contributors:
Mykhailo Potomkin, Oleg Kim, Yuliya Klymenko, Mark Alber, Igor Aranson

Description

The code simulates dynamics of Nc = 32 cells on a degrading substrate with durotaxis. The code derived from the research work "Durotaxis and extracellular matrix degradation promote clustering of cancer cells" by Potomkin, Kim, Klymenko, Alber, Aranson. 1. Build & Run "OCCluster2024.cpp". The folder with this CPP file must contain the sub-folder "numerical_results" 2. Run in MATLAB: (a) "GA3video.m" to create video frames (requires sub-folder "figs/"); (b) "clusterNumbers.m" to identify cell clusters and compute cluster numbers.

Files

Steps to reproduce

1. Build & Run "OCCluster2024.cpp" (that is, compile + ). The folder with this CPP file must contain the sub-folder "numerical_results" 2. Run in MATLAB: (a) "GA3video.m" to create video frames (requires sub-folder "figs/"); (b) "clusterNumbers.m" to identify cell clusters and compute cluster numbers.

Institutions

University of California Riverside

Categories

Mathematical Modeling, Computational Biophysics

Licence