Data for: Comparative gene expression analysis of differentiated terminal and lateral haustoria of the obligate root parasitic plant Phelipanche ramosa (Orobanchaceae)

Published: 3 April 2023| Version 1 | DOI: 10.17632/rjrbd6sjdy.1
, Julia Leman, Susann Wicke


R script and count tables for comparative analysis of transcript data of Phelipanche ramosa (WOSR ecotype), organs/tissue: adventitious roots, lateral haustoria, terminal haustorium - 20230329_BrunLemanWicke_pairwiseComp_DEGanaysis.R: R code for DEG analysis, overrepresentation analysis, and all data/results plots - GO_terms_description.txt: translation table for GO terms - enrich_sig_GO.xlsx: Lists of significantly enriched GO terms from DEG analysis, sorted by GO category - trinotate_annotation_report.xls: functional annotation of the Phelipanche reference transcriptome (OrAe-BC5 build, PPGP: used for mapping - trinotate_report_gene_ontology_with_parents.xls: GO term assignment for unigene annotation of the Phelipanche reference transcriptome build - rsem.gene.counts.matrix: Read count table from mapping individual datasets to the reference transcriptome build; read counts are given per reference unigene ID



Life Sciences, Botany


Deutsche Forschungsgemeinschaft