Data for: Genomic regions associated with mycelial growth and host specificity in Ceratocystis pathogens
Published: 27 June 2019| Version 1 | DOI: 10.17632/rkn3mbcdf9.1
Contributors:
Irene Barnes,
Brenda Wingfield,
Magriet van der Nest,
Michael Wingfield,
Arista Fourie,
Lieschen de Vos
Description
This data provides the MinION genome sequence data for the two genomes used in linkage map and QTL analyses of Ceratocystis fimbriata and C. manginecans. The genomes consist of long sequence reads, obtained from MinION sequence data, to provide improved contig assemblies, and Illumina sequence data to improve base call quality. The dataset also provides a python script that was used to convert the VCF file obtained from GATK to a binary code of A and B; the format required for JoinMap software for linkage map construction.
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Categories
Genomics, Genetic Marker, Fungal Pathogenesis