Datasets related to "Ginger genome enables identification of SMPED1 causing sex-phase synchrony and outcrossing in a flowering plant"

Published: 6 January 2025| Version 1 | DOI: 10.17632/sc4djppg8b.1
Contributors:
Jianli Zhao, Yang Dong, Ao-Dan Huang, Sheng-Chang Duan, Xiao-Chang Peng, Hong Liao, Jiang-Hua Chen, Yin-Ling Luo, Qin-Ying Lan, Ya-Li Wang, Wen-Jing Wang, Xin-Meng Zhu, Pei-Wen Luo, Xue Xia, Bo Li, W. John Kress, Jia-Jia Han, Spencer C. H. Barrett, Wei Chen, Qing-Jun Li

Description

Datasets related to Figure 4, 5 and S6

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Single-copy orthologous genes were identified as defined by OrthoMCL,75 before aligning multiple single-copy genes in MUSCLE. For phylogenomic analysis of angiosperms, the genomes of 281 angiosperms, two pteridophytes, and three gymnosperms were collected. Besides genomes of Apinia mutica, other plant genomes were downloaded from public databases (Table S9). BUSCO analysis was performed for each genome on the basis of 425 single-copy genes.

Institutions

  • Yunnan University
  • Yunnan Agricultural University

Categories

Genomics, Phylogenomics

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