Cancer Types: RNA Sequencing Values from Tumor Samples/Tissues

Published: 18 May 2018 | Version 1 | DOI: 10.17632/sf5n64hydt.1
Contributor(s):

Description of this data

samples: 2086
genes: 971
categories: 5 (BRCA, KIRC, LUAD, LUSC, UCEC)

.

[data: 2086x972 double]

  • each row contains a specific sample
  • each column contains the RPKM RNA-Seq values of a specific gene
  • the last column contains the cancer categories encoded numerically:
    1=BRCA , 2=KIRC, 3=LUAD, 4=LUSC, 5=UCEC

.

[geneIds: 1x971 cell]

  • each cell contains the name/gene ID of every gene stored in each column

.

[cancerTypes: 2086x1 cell]

  • each cell contains the category of every sample stored in each row

.

[1] BRCA: 878
[2] KIRC: 537
[3] LUAD: 162
[4] LUSC: 240
[5] UCEC: 269
(#) in total: 2086

Experiment data files

Related links

This data is associated with the following publication:

Denoising Autoencoder Self-Organizing Map (DASOM)

Published in: Neural Networks

Latest version

  • Version 1

    2018-05-18

    Published: 2018-05-18

    DOI: 10.17632/sf5n64hydt.1

    Cite this dataset

    Ferles, Christos; Papanikolaou, Yannis; Naidoo, Kevin (2018), “Cancer Types: RNA Sequencing Values from Tumor Samples/Tissues”, Mendeley Data, v1 http://dx.doi.org/10.17632/sf5n64hydt.1

Categories

Breast Cancer, Endometrial Cancer, Kidney Cancer, Lung Cancer, Cancer Types, Tumor, RNA Sequencing, Cancer Research

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Licence

CC BY 4.0 Learn more

The files associated with this dataset are licensed under a Creative Commons Attribution 4.0 International licence.

What does this mean?

This dataset is licensed under a Creative Commons Attribution 4.0 International licence. What does this mean? You can share, copy and modify this dataset so long as you give appropriate credit, provide a link to the CC BY license, and indicate if changes were made, but you may not do so in a way that suggests the rights holder has endorsed you or your use of the dataset. Note that further permission may be required for any content within the dataset that is identified as belonging to a third party.

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