Concatenated DNA sequence alignments of CO1, ND1 and 16S rRNA for the land snail Corilla

Published: 08-12-2016| Version 1 | DOI: 10.17632/sffw9cbxh6.1
Contributors:
Dinarzarde Raheem,
K Breugelmans,
C M Wade,
F C Naggs,
T Backeljau

Description

Four concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the Sri Lankan land snail Corilla (Pulmonata: Corillidae). See: Raheem, D.C., Breugelmans, K., Wade, C.M., Naggs, F.C., Backeljau, T., In press, Exploring the shell-based taxonomy of the Sri Lankan land snail Corilla H. and A. Adams, 1855 (Pulmonata: Corillidae) using mitochondrial DNA, Molecular Phylogenetics and Evolution. All datasets aligned using MAFFT v. 7 (Katoh & Standley, 2013, Molecular Biology and Evolution, 30, 772-780). 1) File name: 1_Corilla47seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (42 samples) and 5 other land snails. Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (42 samples) and 5 other stylommatophoran taxa (Albinaria caerulea, Cornu aspersum, Halongella schlumbergeri, Lissachatina fulica and Sculptaria damaraensis damaraensis). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-891 bp (commencing at codon position 3); 16S = 892-2166 bp. 2) File name: 2_Corilla45seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (40 samples) and 5 other land snails. Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (40 samples) and 5 other stylommatophoran taxa (Albinaria caerulea, Cornu aspersum, Halongella schlumbergeri, Lissachatina fulica and Sculptaria damaraensis damaraensis). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-891 bp (commencing at codon position 3); 16S = 892-2163 bp. 3) File name: 3_Corilla42seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (42 samples). Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (42 samples). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-899 bp (commencing at codon position 3); 16S = 900-1361 bp. 4) File name: 4_Corilla40seq.fas Concatenated alignment of CO1, ND1 and 16S rRNA for Corilla (40 samples). Concatenated alignment (including indels) of three mitochondrial genes (CO1, ND1 and 16S rRNA) for the land pulmonate Corilla (40 samples). CO1 = 1-459 by (commencing at codon position 2); ND1 = 460-899 bp (commencing at codon position 3); 16S = 900-1360 bp.

Files

Steps to reproduce

See: Raheem, D.C., Breugelmans, K., Wade, C.M., Naggs, F.C., Backeljau, T., In press, Exploring the shell-based taxonomy of the Sri Lankan land snail Corilla H. and A. Adams, 1855 (Pulmonata: Corillidae) using mitochondrial DNA, Molecular Phylogenetics and Evolution.