Gut microbiota of mouse infected by Giardia muris

Published: 16-07-2019| Version 1 | DOI: 10.17632/sj5cms7fky.1
Ivet Yordanova,
Alba Cortés,
Markus M. Heimesaat,
Cinzia Cantacessi,
Susanne Hartmann,
Sebastian Rausch


Raw 16S rRNA gene sequencing data from faecal samples collected from BALB/c and C57BL/6 mice at 2 weeks following experimental infection with 1,000 cysts of Giardia muris, and uninfected controls of each mouse line. The data set includes three types of files: 1. Raw reads files – 2 per sample (demultiplexed): e.g. Sample-I3_S16_L001_R1_001.fastq.gz and Sample-I3_S16_L001_R2_001.fastq.gz 2. Metadata file containing the relevant contextual information for each sample: Mouse_Giardia_muris_gut-microbiota.csv 3. OTU table created using Qiime2 including all of the taxonomic information: OTU_table.biom