Data for: Alternative biogeochemical states of river pools mediated by hippo use and flow variability

Published: 09-06-2020| Version 1 | DOI: 10.17632/spzzdjskrh.1
Contributors:
Christopher Dutton,
Amanda Subalusky,
Stephen Hamilton,
Ella Bayer,
Laban Njoroge,
Emma Rosi,
David Post

Description

This is the associated code and data files for the manuscript, "Alternative biogeochemical states of river pools mediated by hippo use and flow variability." This manuscript was published in Ecosystems on June 8th, 2020. Dutton, C.L., Subalusky, A.L., Hamilton, S.K. et al. Alternative Biogeochemical States of River Pools Mediated by Hippo Use and Flow Variability. Ecosystems (2020). https://doi.org/10.1007/s10021-020-00518-3 The CSV files contain the data. The RMD file contains the R code in R Markdown format for use with RStudio. The HTML file contains the compiled code from the RMD file. To recreate the analyses and figures from the manuscript, place the CSV files in the same directory as the RMD file. Open the RMD file within RStudio. Confirm that you have all the required libraries then press "knit". DOamhp.csv - CSV file containing the dissolved oxygen measurements collected every 15 minutes from a PME MiniDOT at the bottom and downstream of the Amani Mara Hippo Pool. DOdchp.csv - CSV file containing the dissolved oxygen measurements collected every 15 minutes from a PME MiniDOT at the bottom and downstream of the Double Cross Hippo Pool. DOnbig.csv - CSV file containing the dissolved oxygen measurements collected every 15 minutes from a PME MiniDOT at the surface, bottom and downstream of the NBig Hippo Pool. DOprhp.csv - CSV file containing the dissolved oxygen measurements collected every 15 minutes from a PME MiniDOT at the bottom and downstream of the Picnic Rock Hippo Pool. HippoPoolDepth.csv - CSV file containing depth measurements collected every 5 minutes from an In-Situ Rugged Troll 100 installed downstream of each of the four hippo pools during the intensive sampling campaign. HippoPoolDescriptions.csv - CSV file containing the approximate discharge, volume and residence time of the hippo pools. HippoPoolMetaData.csv - CSV file containing additional data on the hippo pools (including locations). HippoPools_2016.csv - CSV file containing all the biogeochemical measurements collected during the hippo pool survey. HippoPools_2017.csv - CSV file containing all the biogeochemical measurements collected during the flushing flow transition portion of this study.

Files

Steps to reproduce

Download all files into a folder. The CSV files contain the data and must be in the same directory as the R Markdown file (RMD). Open the R Markdown file in R Studio. Download the required libraries if you do not already have them and then press the "knit" button. This will recreate the analyses used in the manuscript and recreate the figures. The compiled file of the R Markdown code is the HTML file of the same name.