Single Molecule Footprinting - Por distal enhancer

Published: 24 May 2023| Version 1 | DOI: 10.17632/t7xj4rc62t.1
Contributors:
Xinyu Nie, Jerome Menet

Description

Data associated with the single molecule footprinting analysis are provided below and consist of: (i) A folder "fastq_files_all_reads" that includes paired end fastq files (R1 and R2) for the 6 samples considered in the analysis, (ii) A folder "Reconstituted_reads_for_analysis" that includes all reconstituted reads used for generated the clustering analysis and heatmap (number downsampled to the sample with the lowest number of reads) (iii) The script used for the analysis, named "porEnhancerAlignmentClusteringAnalysis.ipynb"

Files

Institutions

Texas A&M University Central Texas

Categories

Transcription, Circadian Rhythm, Enhancer, DNA Footprinting

Funding

National Institute of General Medical Sciences

R01GM145737

Licence