Bio-augmentation with dissimilatory nitrate reduction to ammonium (DNRA) driven sulfide-oxidizing bacteria enhances the durability of nitrate-mediated souring control
In Qi et al. 2022, comparative and functional genomics analyses were used to deduce the potential functions (denitrification, sulfide oxidation, and dissimilatory nitrate-reduction to ammonium) of the dominant genus of NR-SOB (Thioclava) and SRB (including Desulfomicrobium, Desulfobulbus, and Desulfovibrio). This dataset is the genome annotation results of NR-SOB (Thioclava) and SRB (including Desulfomicrobium, Desulfobulbus, and Desulfovibrio).
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The genome data of a specific genus was retrieved in NCBI Genome Database that was available before December 1, 2021, and the protein-coding gene sequences of all the species were downloaded for KEGG assignment. Duplicate data were removed from the downloaded results based on the taxonomy id. KOs and KEGG pathway annotations were based on the database of eggNOG 5.0. Python library eggNOG-mapper (v2.1.3) was used to process the annotations, and seed orthologs were searched by diamond in sensitive mode.