Dataset of De Novo Hybrid Berry Transcriptome Profiling and Characterization of Piper sps. (Piper nigrum and Piper longum) using Illumina and Nanopore Sequencing
Published: 21 June 2021| Version 1 | DOI: 10.17632/vyr4r7mxj8.1
Contributors:
Sheeja T E, Shelvy S, Muhammad Fayad, Johnson George, Santhosh J Eapen, , Dinesh Kumar, Anil RaiDescription
De-novo hybrid Transcriptome analysis using Illumina and Nanopore platform. ◦ Hybrid transcriptome assembly. ◦ Isoform detection and Gene prediction
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The short read assembly is performed with Illumina data using velvet and oases, and short read assembly along with Nanopore and Illumina reads was used for the De-novo hybrid transcriptome assembly using IDP-denovo. A total of 308369 contigs from P. nigrum and 267715 contigs from P. longum were generated. The hybrid transcriptome assembly, Isoform detection, and gene prediction are also processed in the analysis.
Institutions
Indian Institute of Spices Research
Categories
Natural Sciences, Agricultural Plant, Agricultural Biotechnology