Data for: 5-gene differential expression predicts stability of human intestinal allografts

Published: 01-09-2017| Version 2 | DOI: 10.17632/wwhdy98hkc.2
Contributors:
Paloma Talayero,
Fatima Sanchez-Cabo,
Jorge Calvo-Pulido,
Estela Paz-Artal,
Lola Alonso-Guirado,
Haydee Artaza,
Sarbelio Rodríguez-Muñoz,
Esther Mancebo,
Mario García de Lacoba,
Ana Dopazo,
Guillermo Padilla

Description

The zip file includes: • “1-edgeR_DEGs.R”: the script for differential analysis. • “2-pamr.R”: the script for gene selection by nearest shrunken centroids method. • “3-MLSeq.R”: the script for the validation of the 5-genes set by SVM, bagSVM and random forest methods. • “4-logistic_regression.R”: the script for logistic regression and validation for the qPCR results. • “qPCR_results.txt”: the relative expression values (calculated as 2-ΔCt) of all qPCR samples.

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