Data for: 5-gene differential expression predicts stability of human intestinal allografts

Name: Data for: 5-gene differential expression predicts stability of human intestinal allografts
Creator: Paloma Talayero
Published: 2017-09-01T22:34:12.823Z
Keywords: RNA Sequencing, Intestinal Transplantation

Talayero, Paloma; Sánchez-Cabo, Fátima; Calvo-Pulido, Jorge; Paz-Artal, Estela; Alonso-Guirado, Lola; Artaza, Haydee; Rodríguez-Muñoz, Sarbelio; Mancebo, Esther; García de Lacoba, Mario; Dopazo, Ana; Padilla, Guillermo

doi:10.17632/wwhdy98hkc.2

Data for: 5-gene differential expression predicts stability of human intestinal allografts

Published: 1 September 2017| Version 2 | DOI: 10.17632/wwhdy98hkc.2

Contributors:

Paloma Talayero, Fátima Sánchez-Cabo, Jorge Calvo-Pulido, Estela Paz-Artal, Lola Alonso-Guirado, Haydee Artaza, Sarbelio Rodríguez-Muñoz, Esther Mancebo, Mario García de Lacoba, Ana Dopazo, Guillermo Padilla

Description

The zip file includes: • “1-edgeR_DEGs.R”: the script for differential analysis. • “2-pamr.R”: the script for gene selection by nearest shrunken centroids method. • “3-MLSeq.R”: the script for the validation of the 5-genes set by SVM, bagSVM and random forest methods. • “4-logistic_regression.R”: the script for logistic regression and validation for the qPCR results. • “qPCR_results.txt”: the relative expression values (calculated as 2-ΔCt) of all qPCR samples.

Data for: 5-gene differential expression predicts stability of human intestinal allografts

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