Raw DNA Methylation Data; Herrgott et al., 2022

Published: 10 May 2022| Version 1 | DOI: 10.17632/x954653zkr.1
Contributors:
Grayson Herrgott,
,

Description

Raw cfDNA methylation intensity data files (IDAT) for 96 liquid biopsy collections (blood serum & plasma) from pituitary neuroendocrine tumors (PitNETs), other pituitary diseases (craniopharyngioma, pituicytoma, etc.) and other tumor/non-tumorous conditions.

Files

Steps to reproduce

library(minfi) idat <- read.metharray.exp(targets = NULL,base=getwd(),recursive = TRUE) proc <- preprocessNoob(idat, offset = 0, dyeCorr = TRUE, verbose = TRUE, dyeMethod="reference") detP <- detectionP(idat, type = "m+u") proc.r <- ratioConvert(proc) is.na(assays(proc.r)$Beta) <- (detP[rownames(proc.r), colnames(proc.r)] > 1E-16) beta <- assays(proc.r)$Beta

Institutions

Henry Ford Health System

Categories

Methylation, Blood, Epigenetics, Pituitary Tumor

Licence