Assessment of Haplotype-resolved genome assembly in TGY genome

Published: 10-12-2020| Version 1 | DOI: 10.17632/xpccyg5w2x.1
Xingtan Zhang


The dataset includes three files, 10x.WH.phase.txt.gz, PB.WH.phase.txt.gz and ALLHiC.hapVar.snps.gz. The 10x.WH.phase.txt.gz is a file recorded the phased SNPs generated by whatshap using 10x Genomics Linked reads. Similarly, the PB.WH.phase.txt.gz contains phased SNPs by whatshap using PacBio long reads. And ALLHiC.hapVar.snps.gz contain the allelic variants identified by a comparison between two haplotypes using NUCMER program.