Spondias tuberosa raw SNPs markers

Published: 2 April 2024| Version 1 | DOI: 10.17632/xpxs3fkdzz.1
Allison Vieira,


Sampling locations of umbu trees (Spondias tuberosa), from seven locations distributed in the states of Minas Gerais (MG), Bahia (BA), Paraíba (PB) and Pernambuco (PE), in the Caatinga biome. The samples were sequenced using genotyping-by-sequencing (GBS). The genomic library was prepared following the protocol described by Poland et al. (2012). The library was then qualitatively evaluated using the BioAnalyzer system (Agilent Technologies) and quantified using the NEBNext® Library Quant Kit for Illumina (New England Biolabs) on the CFX 384 Touch Real Time PCR Detection System (Bio-Rad Laboratories). Subsequently, the library was sequenced in a flowcell using a sequencer on the HiSeq2500 Illumina platform, with the company EcoMol, at the Genomics Center of ESALQ/USP. The data contain the neutral loci and the outliers loci.



Universidade de Sao Paulo


Plant Genetics, Genomic Analysis, Genetic Diversity, Amazon, Conservation Genetics