Data for: Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae)

Published: 04-12-2019| Version 1 | DOI: 10.17632/xv7npzzttg.1
Contributors:
Hongying Sun,
Zhan Zhang,
Da Pan,
Jiajia Cheng,
Neil Cumberlidge,
Lingna Lv,
Yuhui Xing

Description

13+2BIalignment.nex: sequence alignment of 13 PCGs + 2 rRNAs NT dataset for BI reconstruction including mrbayes model. 13+2BI.result: BI result tree of 13 PCGs + 2 rRNAs NT dataset. 13+2NT.phy: sequence alignment (Phylip format) of 13 PCGs + 2 rRNAs dataset for ML reconstruction. 13+2RAxML_bipartitions.result: ML result tree of 13 PCGs + 2 rRNAs NT dataset. 13AA.phy: sequence alignment of 13 PCGs AA dataset. 13AABI.tre: result BI tree based on 13 PCGs AA dataset. 13AARAxML_bipartitions.result: result ML tree based on 13 PCGs AA dataset. 13NT.phy: sequence alignment of 13 PCGs NT dataset. 13NTBI3.tre: result BI tree based on 13 PCGs NT dataset. 13NTRAxML_bipartitions.result: result ML tree based on 13 PCGs NT dataset. BMPmatric.nex: data matric for BMP analysis. BMPtree.tre: result tree of BMP analysis. EMPmatric.nex: data matric for EMP analysis. EMPtree.tre: result tree of EMP analysis. LeuAlignment.nex: sequence alignment for trnLs phylogenetic. LeuTree.tre: result tree of trnLs phylogenetic. NCR.phy: sequence alignment for mNCRs phylogenetic. NCRml.tre: result tree of mNCRs phylogenetic. trexinput1~8.txt: input files for TreeREx analyses. trex1~8.dot, trex1~8.out, trex1~8.pdf: output files of TreeREx analyses.

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