Context embeddings trained on short sequence FASTA files for human alternative splicing

Published: 26 April 2023| Version 2 | DOI: 10.17632/ybz8tcvnv9.2
Contributor:
Daniel Um

Description

Data to generate "FIGURE 5: Context embeddings trained on short sequence FASTA files for human alternative splicing – n = 10,541" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries" by Daniel H. Um, et al.

Files

Steps to reproduce

Use Context_Embeddings_3D_Plot_Generation_Script.ipynb on alternative_splicing_human_10541.fasta to generate 3D_plot_FASTA_files_for_human_alt_splicing.png.

Institutions

Columbia University

Categories

Bioinformatics, Machine Learning

Licence