Annotated genes at Eggnog-mapper, iTAK and PlantTFDB in the main cultivated Solanaceae: tomato, potato and chili peppers
Description
This dataset contains annotated genes files of the main cultivated Solanaceae species. Coding protein genes of tomato (Solanum lycopersicum), potato (Solanum tuberosum) and chili peppers (Capsicum annuum var. annuum, C. annuum var. glabriusculum, C. baccatum, C. chinense), counting 10 accessions, were characterized via the Eggnog-mapper, iTAK and PlantTFDB tools. The resultant annotated genes files are valuable and now available to the interested community for downstream analysis.
Files
Steps to reproduce
Analyzed genome are available at: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/512/255/GCA_000512255.2_ASM51225v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/878/395/GCF_002878395.1_UCD10Xv1.1/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/745/845/GCA_011745845.1_SNU_ECW_1.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/745/865/GCA_011745865.1_SNU_SF_1.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/271/885/GCA_002271885.2_ASM227188v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/271/895/GCA_002271895.2_ASM227189v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/075/GCF_000226075.1_SolTub_3.0/ http://pgd.pepper.snu.ac.kr Methods are available at: http://eggnog-mapper.embl.de/ http://itak.feilab.net/cgi-bin/itak/online_itak.cgi http://planttfdb.gao-lab.org/prediction.php