Annotated genes at Eggnog-mapper, iTAK and PlantTFDB in the main cultivated Solanaceae: tomato, potato and chili peppers

Published: 1 May 2024| Version 1 | DOI: 10.17632/ycxrtzz462.1
Contributors:
Mauro Grabiele,

Description

This dataset contains annotated genes files of the main cultivated Solanaceae species. Coding protein genes of tomato (Solanum lycopersicum), potato (Solanum tuberosum) and chili peppers (Capsicum annuum var. annuum, C. annuum var. glabriusculum, C. baccatum, C. chinense), counting 10 accessions, were characterized via the Eggnog-mapper, iTAK and PlantTFDB tools. The resultant annotated genes files are valuable and now available to the interested community for downstream analysis.

Files

Steps to reproduce

Analyzed genome are available at: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/512/255/GCA_000512255.2_ASM51225v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/878/395/GCF_002878395.1_UCD10Xv1.1/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/745/845/GCA_011745845.1_SNU_ECW_1.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/745/865/GCA_011745865.1_SNU_SF_1.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/271/885/GCA_002271885.2_ASM227188v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/271/895/GCA_002271895.2_ASM227189v2/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0/ https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/075/GCF_000226075.1_SolTub_3.0/ http://pgd.pepper.snu.ac.kr Methods are available at: http://eggnog-mapper.embl.de/ http://itak.feilab.net/cgi-bin/itak/online_itak.cgi http://planttfdb.gao-lab.org/prediction.php

Institutions

Consejo Nacional de Investigaciones Cientificas y Tecnicas, Universidad Nacional de Misiones Facultad de Ciencias Exactas Quimicas y Naturales, Instituto de Biologia Subtropical

Categories

Protein Annotation, Crop Genetics, Computational Biology

Licence