Proteome-Wide Bioinformatic Annotation and Functional Validation of the Monotopic Phosphoglycosyl Transferase Superfamily

Description

Optimized Sequence Similarity Networks (SSNs) of the SmPGT family allowing for functional annotation of clusters as validated in the published work. Datasets S1-S4 and S6 can all be visualized using Cytoscape. Dataset S1 is the network file for the E-value 1x 10-61, 100% representative node SmPGT network. Dataset S2 is the Cytoscape session file, with applied coloring, of the E-value 1x 10-61, 100% representative node SmPGT network. Dataset S3 is the network file for the E-value 1x 10-71, 100% representative node SmPGT network. Dataset S4 is the Cytoscape session file, with applied coloring, of the E-value 1x 10-61, 100% representative node SmPGT network. Dataset_5 is the Genome Neighbourhood Network of the E-71 SSN, viewable as diagrams on the EFI-EST server. Dataset_S6 is Genome Neighbourhood Diagrams of the clusters from the E-71 SSN, with the clusters as hub-nodes and neighbouring Pfam families as spoke-nodes

Steps to reproduce

See publication doi: https://doi.org/10.1101/2024.07.10.602977

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