monoPGT Superfamily Sequence Similarity Network and Genome Neighborhood Network

Published: 22-01-2021| Version 1 | DOI: 10.17632/zcx42s9mzf.1
Contributors:

Description

Cytoscape compatible files of the sequence similarity network (SSN) and genome neighborhood network (GNN) of the monoPGT Superfamily. Dataset S1 is an all-by-all blast 40% representative node network file, E-value: 1 x 10-90. Dataset S2 is a genome neighborhood network file generated from the 40% representative node network (E-value: 1 x 10-90). Dataset S3 is a genome neighborhood diagram of selected polyPGT_F-monoPGT_NF members, visualized in SI Appendix Figure S4 of accompanying manuscript. Dataset S4 is a spreadsheet containing UniProt IDs and FASTA header information for all representative nodes in the sequence similarity network.

Files

Steps to reproduce

See manuscript for details: Glycoconjugate pathway connections revealed by sequence similarity network analysis of the monotopic phosphoglycosyl transferases Katherine H. O’Toole, Barbara Imperiali, and Karen N. Allen Proc. Nat. Acad. Sci. https://doi.org/10.1073/pnas.2018289118