The origins and vulnerabilities of two transmissible cancers in Tasmanian devils

Published: 8 Apr 2018 | Version 1 | DOI: 10.17632/znfphvhmbv.1
Contributor(s):

Description of this data

This dataset contains a number of zip folders, grouping information relevant to reproduce key items and figures of our study:

Stammnitz, M.R. et al. "The origins and vulnerabilities of two transmissible cancers in Tasmanian devils". Cancer Cell 33(4), 607-619 (2018).

Experiment data files

  • Additional Tables
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  • FISH
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    • Telomeres
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    • Whole Chromosomes
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      • Composites
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  • Genome Assemblies
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    • DFT1s
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    • DFT2s
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    • Hosts
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    • PAVs of Tumours vs. Devil7.1
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  • Immunohistochemistry (IHC)
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    • Cytokeratin
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    • NSE
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    • PDGFRs
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      • PDGFRA
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      • PDGFRB
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    • PRX
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    • S100
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    • SMA
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    • VIM
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    • WWTR1/TAZ
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    • YAP1
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  • Mutation Calls
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Steps to reproduce

Files in the folders of this repository are:

  • tab-delimited tables as .TXT
  • gzipped .FASTA for assembly contigs
  • images in .TIFF and .PDF formats.

Numerical data can be processed with R scripts located in the Github repository for this study:
https://github.com/MaximilianStammnitz/The-origins-and-vulnerabilities-of-two-transmissible-cancers-in-Tasmanian-devils/

BAM files can be accessed via the European Nucleotide Archive:
https://www.ebi.ac.uk/ena/data/view/PRJEB21902

Related links

This data is associated with the following publication:

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils

Published in: Cancer Cell

Latest version

  • Version 1

    2018-04-08

    Published: 2018-04-08

    DOI: 10.17632/znfphvhmbv.1

    Cite this dataset

    Stammnitz, Maximilian (2018), “The origins and vulnerabilities of two transmissible cancers in Tasmanian devils”, Mendeley Data, v1 http://dx.doi.org/10.17632/znfphvhmbv.1

Statistics

Views: 1745
Downloads: 315

Institutions

Wellcome Sanger Institute, University of Cambridge

Categories

Genome, Genotype, Immunohistochemistry, Fluorescence Labeling, DNA Mutation, Genome Variation, Drug Screening

Licence

CC BY 4.0 Learn more

The files associated with this dataset are licensed under a Creative Commons Attribution 4.0 International licence.

What does this mean?
You can share, copy and modify this dataset so long as you give appropriate credit, provide a link to the CC BY license, and indicate if changes were made, but you may not do so in a way that suggests the rights holder has endorsed you or your use of the dataset. Note that further permission may be required for any content within the dataset that is identified as belonging to a third party.

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