Infection, Genetics and Evolution

The Echinostoma miyagawai mitochondrial genome is 14,416 bp in size, and contains 12 protein-coding genes (cox1–3, nad1–6, nad4L, cytb, and atp6), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and one non-coding region (NCR).

A nested case-control study was conducted in Chinese anti-TB treatment patients with 290 Anti-tuberculosis drug-induced hepatotoxicity (ATDH) cases and 580 controls. Each ATDH case was matched with two controls by age, gender, treatment history, etc. seven tag single-nucleotide polymorphisms (tagSNPs) in BACH1 gene were selected and analysed.

Fasta file with 303 aligned E. granulosus s. s. mtDNA sequences. The alignment contains gaps: the strings of NNN-s represent gaps of estimated length based on the reference sequence (AB786664 in GenBank).

These alignment files were used for the reconstructing phylogenetic tree in RAxML and to calculate the intraspecific genetic distance (K2P distance) in the software MEGA X. The DNA sequences are partial COI genes used for the barcoding of organisms. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450

These alignment files were used for the reconstructing phylogenetic tree in RAxML and to calculate the intraspecific genetic distance (K2P distance) in the software MEGA X. The DNA sequences are partial COI genes used for the barcoding of organisms. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450

These are .nex files for nine Anopheles species that were abundantly found in the West Khasi hills and West Jainitia hills district in Meghalaya state of India. These alignment files were used to make haplotype networks in the software POPART. The data contains sequences from three study sites: Nartiang, Barato and Nonglang. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450

These DNA sequences consist of partial COI gene for ten Anopheles species found abundantly in the three study sites of Meghalaya in northeast India. These files were used to calculate haplotype diversity, nucleotide diversity, Tajima's D in the software DNASP. The results of this analysis are published in Table 1 of the paper https://doi.org/10.1016/j.meegid.2023.105450

These files are COI sequences for three Anopheles species, An. pseudowillmori, An. jeyporiensis and An. maculatus.The DNA sequence alignments were used for generating FST statistics in the software Arlequin v3. Each fasta file contains sequences from two different populations, i.e. from two study sites Nonglang and Nartiang in Meghalaya. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450

These are .nex files for nine Anopheles species that were abundantly found in the West Khasi hills and West Jainitia hills district in Meghalaya state of India. These alignment files were used to make haplotype networks in the software POPART. The data contains sequences from three study sites: Nartiang, Barato and Nonglang. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450

These DNA sequences consist of partial COI gene for ten Anopheles species found abundantly in the three study sites of Meghalaya in northeast India. These files were used to calculate haplotype diversity, nucleotide diversity, Tajima's D in the software DNASP. The results of this analysis are published in Table 1 of the paper https://doi.org/10.1016/j.meegid.2023.105450