Marine Genomics
ISSN: 1874-7787
Datasets associated with articles published in Marine Genomics
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- Data for: Diatom genes originating from red and green algae: implications for the secondary endosymbiosis modelsA dataset used for establishing whether diatom genes are closer to red algae or green ones. Based on genomes of P. tricornutum, Th. pseudonana, S. acus subsp. radians, F. solaris, F. cylindrus and P.-n. multiseries, as well as all available diatom transcriptomes from MMETSP. The dataset includes ML and UPGMA trees, Likelihood mapping raw data, alignments used for the above and the results of DIAMOND search of diatom predicted proteins against NCBI nr.
- Data for: De novo assembly and annotation of the Acropora gemmifera transcriptomeTranscriptome of Acropora gemmifera. Sample collected in Southern Taiwan at 3 - 4 m depth.
- Fasta alignment for "A Phylogenetic Classification of Gastropod Aquaporins"This is a fasta alignment of the amino acid sequences analysed in this paper. Most sequences are identified by GenBank accession number. Accessions from the DDBJ or EMBL are specified by "accession from". The Nerita, Georissa and Pleuropoma sequences are identified by the contig number in the partial assemblies referred to in the manuscript. The GenBank accession numbers for these are MF380517 - MF380527 and MF510930 - MF510933. The GenBank Crassostrea gigas sequences are identified by CGI and the locus-tag. Human aquaporins are identified by the aquaporin type followed by the GenBank accession number. Sequences beginning with PC are deduced from the transcriptome data for Pomacea canaliculata published by Sun et al. 2012. (De novo assembly of the transcriptome of an invasive snail and its multiple ecological applications. Mol. Ecol. Resources 12, 1133–1144.)
- Data for: De novo assembly and comprehensive characterization of the skeletal muscle transcriptomes of the European anchovy (Engraulis encrasicolus)A fasta file of all consensus muscle contig sequences.