Datasets for “Quantitative prediction of the landscape of T cell epitope immunogenicity in sequence space” by Ogishi and Yotsuyanagi

Published: 3 April 2019| Version 3 | DOI: 10.17632/2hp96k6m2c.3
Contributor:
Masato Ogishi

Description

FeatureDF is a feature dataframe in the fst format which can be imported by using the fst package in R. MinimumFeatureSet is a list containing the minimum set of predictive features and the importance estimates. NeighborNetwork is a list contianing undirected and directed neighbor networks.

Files

Steps to reproduce

See the ReadMe of the R package Repitope. https://github.com/masato-ogishi/Repitope

Institutions

Tokyo Daigaku

Categories

Immunology, Machine Learning, Epitope

Related Links

Article
https://www.frontiersin.org/articles/10.3389/fimmu.2019.00827/abstract
compiles this dataset

Licence