Out of chaos: Phylogenomics of Asian Sonerileae

Published: 5 January 2022| Version 1 | DOI: 10.17632/4bmxjhxv4m.1
Contributors:
Qiujie Zhou,
Jinhong Dai,
Che-Wei Lin,
Weilun Ng,
Truong Do,
Jarearnsak Wai,
Fabian A. Michelangeli,
Marcelo Reginato,
Renchao Zhou,
Ying Liu

Description

### Tigridiopalma_magnifica_reference_genome Description: Reference genome sequence of Tigridiopalma magnifica ### Plastome_alignment.fasta Description: Alignment of 223 whole chloroplast genomes ### genomic_dataset.vcf Description: vcf file of the genomic dataset, generated by mapping whole-genome resequencing data of 223 samples to ***Tigridiopalma magnifica*** reference genome, further filtered based on hard filtering by GATK and LD by Plink. ### SCO_dataset.vcf Description: vcf file of single-copy ortholog dataset, generated by mapping whole-genome resequencing data of 223 samples to 332 reference single copy orthologs, further filtered based on hard filtering by GATK. ### reference_sequeces_of_332_SCO.fasta Description: 332 reference single-copy orthologs assembled using Mitobim, based on 332 single-copy genes identified by OrthoFinder.

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Phylogenomics

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