RNAseq_EY

Published: 20 July 2023| Version 1 | DOI: 10.17632/4dtx5nhr74.1
Contributor:
Farhoud Faraji

Description

Bulk RNAseq data of epithelia at 15 days post transgene induction.

Files

Steps to reproduce

Paired-end reads were aligned using STAR v2.7.9 using default settings. STAR index was created using the GRCm39 primary genome FASTA and annotation files. The resulting BAM files were sorted by name using samtools v1.7 then gene counts were quantified using HTSeq-count v0.13.5. Pairwise differential expression was calculated and principal component analysis plots were created using DESeq2 v1.34.0.

Institutions

University of California San Diego Health Sciences

Categories

RNA Sequencing

Funding

Entertainment Industry Foundation

308268-00001

Licence