Somatic variant detection using an individual-specific pangenome reference: a case study of a pediatric acute myeloid leukemia patient

Description

This repository includes the VCF-level data needed to reproduce the figure(s) from the paper "Somatic variant detection using an individual-specific pangenome reference: a case study of a pediatric acute myeloid leukemia patient", including downstream analysis of structural and short variants, synteny analysis, tumor phylogeny and driver analysis results plotting.

Steps to reproduce

See linked Github repository (Related links) for more information on how to reproduce the data.

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