Raw DNA Methylation Data; Mosella et al., 2021

Published: 6 June 2022| Version 1 | DOI: 10.17632/5pzd2rg5ys.1
Contributors:
Grayson Herrgott,
,

Description

Raw cfDNA methylation intensity data files (IDAT) for 29 tumor tissue collections from pituitary neuroendocrine tumors (PitNETs) and other non-tumorous conditions.

Files

Steps to reproduce

library(minfi) idat <- read.metharray.exp(targets = NULL,base=getwd(),recursive = TRUE) proc <- preprocessNoob(idat, offset = 0, dyeCorr = TRUE, verbose = TRUE, dyeMethod="reference") detP <- detectionP(idat, type = "m+u") proc.r <- ratioConvert(proc) is.na(assays(proc.r)$Beta) <- (detP[rownames(proc.r), colnames(proc.r)] > 1E-16) beta <- assays(proc.r)$Beta

Institutions

Henry Ford Health System

Categories

Methylation, Epigenetics, Neuroendocrine Tumor

License