Dataset of the first de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb.
The RNA-seq data was obtained from 3 bulk parts of the rhizome of the temu ireng (C. aeruginosa) representing a complete set of transcriptome data from primary, secondary and tertiary rhizomes produced from 6-month-old plants.
Steps to reproduce
SRR22995961 reads were submitted to Galaxy (https://usegalaxy.org/) and Trimmomatic 0.38.0 (toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.0) used to trim adapters and low quality bases (slidingwindow, 4 bases, 20 average quality). Paired trimmed reads were submitted to an assembly step via rnaSPAdes 3.15.3 (toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy2) using default parameters (select k-mer detection option: auto).