Rat T2T genome assembly, rat pangenome and supporting files

Published: 24 March 2026| Version 1 | DOI: 10.17632/7tydm36c54.1
Contributor:
Peter Doris

Description

Genome assembly fasta: SHRSP_T2T_submit.fa.gz Gene annotation gff by Liftoff: SHRSP_T2T_2-25.sorted.gff Braker3 annotation gff: braker.sorted.gff3 RepBase annotation gff: SHRSP_Repeatmasker_annotated_sorted.gff3 Iso-Seq HQ reads aligned to assembly bam file: SHR_A3_IsoSeq_HQ_clustered_19tiss_no_sec.sorted.bam Rat pangenome graph (8 strains): rat_pg.gfa.gz Rat pangenome SV length variants: rat_pg.svlen.vcf.gz

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Categories

Genetics, Genomics, Cytogenetics

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