Supplementary data for the article: An obligate symbiont of Haematomyzus elephantis with strongly reduced genome resembles symbiotic bacteria in sucking lice.
Description
Alignments folder: 14-gene matrix - concatenated matrix of 14 ortholog sequences (AA) extracted from representative set of available proteomes for Enterobacteriaceae (analyzed by PhyML and PhyloBayes) in a fasta format Phylogenetic trees folder: Phylogenetic trees generated by PhyML and PhyloBayes in a newick format. Annotations folder: Annotations of the genomes and genome drafts used for metabolism comparison in gbk format. K numbers folder: K numbers generated by BlastKOALA server for corresponding genomes. Detailed description of used methods can be found in the Materials and Methods section.
Files
Steps to reproduce
Alignments folder: 14-gene matrix - concatenated matrix of 14 ortholog sequences (AA) extracted from representative set of available proteomes for Enterobacteriaceae (analyzed by PhyML and PhyloBayes) in a fasta format Phylogenetic trees folder: Phylogenetic trees generated by PhyML and PhyloBayes in a newick format. Annotations folder: Annotations of the genomes and genome drafts used for metabolism comparison in gbk format. K numbers folder: K numbers generated by BlastKOALA server for corresponding genomes. Detailed description of used methods can be found in the Materials and Methods section.
Institutions
- Jihoceska Univerzita v Ceskych Budejovicich Prirodovedecka Fakulta